PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039436
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 104aa    MW: 11700.7 Da    PI: 10.3219
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039436genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89e-31959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++gklye+ss
  PGSC0003DMP400039436  9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPKGKLYEFSS 59
                          79***********************************************96 PP

2K-box39.91.8e-1459973472
                 K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72
                          + R+llG +Les +l eLqq+e+qLeksl++iR++K ++
  PGSC0003DMP400039436 59 SSRKLLGHGLESSTLDELQQVEEQLEKSLSNIRARKVKI 97
                          57**********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.595161IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-29361IPR002100Transcription factor, MADS-box
CDDcd002651.06E-35360No hitNo description
PRINTSPR004042.0E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.68639103IPR002487Transcription factor, K-box
PfamPF014864.7E-115997IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010048Biological Processvernalization response
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MVRGKTELKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP KGKLYEFSSS  60
RKLLGHGLES STLDELQQVE EQLEKSLSNI RARKVKIYIC LNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-17360259Myocyte-specific enhancer factor 2A
3mu6_B1e-17360259Myocyte-specific enhancer factor 2A
3mu6_C1e-17360259Myocyte-specific enhancer factor 2A
3mu6_D1e-17360259Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2441954e-92AC244195.1 Solanum lycopersicum strain Heinz 1706 chromosome 8 clone hba-6a9 map 8, complete sequence.
GenBankHG9754474e-92HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755204e-92HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358849.12e-50PREDICTED: agamous-like MADS-box protein AGL19
SwissprotO646452e-42SOC1_ARATH; MADS-box protein SOC1
TrEMBLM1C2V52e-68M1C2V5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000585607e-50(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-36AGAMOUS-like 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]